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Electronic Spectroscopy of Cyanine Dyes

Shaun Williams, PhD

Cyanine Dyes

A general Lewis structure of a cyanine dye.

Absorption Characteristics

A comparison of the absorption curves of three cyanine dyes. Dye I has 3 carbon atoms and the absorption maximum is at 309 nm, dye II has 5 carbon atoms and the absorption maximum is at 409 nm, and dye III has 7 carbon atoms and the absorption maximum at 512 nm. \(\chem{R=CH_3}\)

Example 4.1

Draw the Lewis electron dot structure of dye I that produced the spectrum shown in the Figure on the previous slide with the maximum absorption at 309 nm. Examine the resonance structures and determine whether all the carbon-carbon bonds are identical or whether some are single bonds and some are double bonds.

Example 4.2

Use the absorption spectra from two slides ago to describe what happens to the maximum absorption coefficient and the wavelength of the peak absorption as the length of a cyanine dye molecule increases.

Cyanine Dye Electrons

The Lewis structure of a cyanine dye showing the p_z orbitals.

Example 4.3

Determine the number of pi electrons in each of the three molecules previously described: dye I, dye II, and dye III.

Delocalization

A diagram showing the transition from a lower energy level to a higher energy level.

Potential Energy

A diagram of the particle-in-a-box potential and a more realistic potential.

Particle-in-a-Box (PIB) Potential

The Particle-in-a-Box Model Usages

Example 4.4

In the previous potential energy figure, why does a realistic potential energy dip at each atom? Why is the dip larger for nitrogen than for carbon? Why does the potential energy increase sharply at the ends of the molecule?

The Particle-in-a-Box Model

The Particle-in-a-Box Potential

The Particle-in-a-Box Schrödinger Equation

Example 4.5

Use \( \sin(kx)\), \( \cos(kx)\), and \( e^{ikx} \) for the possible wavefunctions in Equation \eqref{eq:4.3.3} and differentiate twice to demonstrate that each of these functions satisfies the Schrödinger equation for the particle-in-a-box.

First Solutions

Boundary Conditions

Example 4.6

Which of the functions \(\sin(kx)\), \(\cos(kx)\), or \(e^{ikx}\) is \(0\) when \(x = 0\)?

Satisfying the Boundary Condition

  • As was found in the previous example, the only function that is zero at \(x=0\) is \(\sin(kx)\)
  • This means that only \(\sin(kx)\) is a physically acceptable solution to the Schrödinger equation
  • The second boundary condition required that \(\psi(L)=0\) $$ \begin{equation} \psi(L)=\sin(kL)=0 \label{eq:4.3.8}\end{equation} $$
  • Note that a sine function will be zero if \(kL=n\pi\) with \(n=1,2,3,\dots\)
  • Thus, $$ \begin{equation} k=\frac{n\pi}{L}\text{ with } n=1,2,3,\dots \label{eq:4.3.9}\end{equation} $$
  • Note that \(n=0\) is not acceptable because \(\psi(x)=0\) everywhere
  • The Particle-in-a-Box Wavefunctions

    Normalizing the Wavefunctions

    $$ N^2 \int_0^L \sin^2 \left( \frac{n\pi x}{L} \right) dx=1 $$ $$ N=\sqrt{\frac{1}{\int_0^L \sin^2 \frac{n\pi x}{L} dx}} $$ $$ N=\sqrt{\frac{2}{L}} $$ This gives us the wavefunction $$ \begin{equation} \psi_n(x)=\sqrt{\frac{2}{L}}\sin \left( \frac{n\pi}{L} x \right) \label{eq:4.3.17} \end{equation} $$

    Example 4.7

    Evaluate the integral in Equation \eqref{eq:4.3.14} and show that \(N=\sqrt{\frac{2}{L}}=\left(\frac{2}{L}\right)^{\frac{1}{2}}\)

    Summary of the Particle-in-a-Box So Far

    Example 4.8

    Substitute the wavefunction, Equation \eqref{eq:4.3.17}, into Equation \eqref{eq:4.3.3} and differentiate twice to obtain the expression for the energy given by Equation \eqref{eq:4.3.18}.

    Example 4.9

    Here is a neat way to deduce or remember the expression for the particle-in-a-box energies. The momentum of a particle has been shown to be equal to \(\hbar k\). Show that this momentum, with \(k\) constrained to be equal to \(\frac{n\pi}{L}\), combined with the classical expression for the kinetic energy in terms of the momentum \(\left( \frac{p^2}{2m} \right)\) produces Equation \eqref{eq:4.3.18}. Determine the units for \(\frac{h^2}{8mL^2}\) from the units for \(h\), \(m\), and \(L\).

    Example 4.10

    Why must the wavefunction for the particle-in-a-box be normalized? Show that \( \psi(x)\) in Equation \eqref{eq:4.3.17} is normalized.

    Example 4.11

    How does the energy of the electron depend on the size of the box and the quantum number \(n\)? What is the significance of these variations with respect to the spectra of cyanine dye molecules with different numbers of carbon atoms and \(\pi\) electrons? Plot \( E(n^2) \), \( E(L^2) \), and \( E(n) \) on the same figure and comment on the shape of each curve.

    Spectroscopy of the Particle-in-a-Box Model

    Orbital Transitions

    Transition Specifics

    Empirically Discover the Pauli Exclusion Principle

    Example 4.12

    Draw energy level diagrams indicating the HOMO, the LUMO, the electrons and the lowest energy transition for each of the three cases mentioned in the preceding slide.

    Example 4.13

    For the three ways of assigning the 6 electrons to the energy levels in the previous Example, calculate the peak absorption wavelength \(\lambda\) for a cyanine dye molecule with 3 carbon atoms in the chain using a value for \(L\) of \(0.849\, nm\), which is obtained by estimating bond lengths. Which wavelength agrees most closely with the experimental value of \(309\, nm\) for this molecule?

    Final Notes about Transitions

    The Transition Dipole Moment and Spectroscopic Selection Rules

    Beginning to Obtain the Selection Rules

    The Interaction

    Example 4.14

    Calculate the dipole moment of \(\chem{HCl}\) from the following information. The position vectors below use Cartesian coordinates \((x, y, z)\), and the units are \(pm\). What fraction of an electronic charge has been transferred from the chlorine atom to the hydrogen atom in this molecule? \( r_H=(124.0,0,0)\), \(r_{Cl}=(−3.5,0,0)\), \(q_H=2.70\times 10^{−20}C\), \(q_{Cl}=−2.70\times 10^{−20}C\).

    Interaction Energy

    Transition Dipole Moment

    Analyzing the Transition Dipole Moment

    Selection Rules for the Particle-in-a-Box

    Simplifying Our Integral

    Integral Evaluation

    Example 4.15

    Show that if \(\Delta n\) is an even integer, then \(n_T\) must be an even integer and \(\mu_T=0\).

    Example 4.16

    Show that if \(n_i\) and \(n_f\) are both even or both odd integers then \(\Delta n\) is an even integer and \(\mu_T=0\).

    Example 4.17

    Show that if \(\Delta n\) is an odd integer, then \(n_T\) must be an odd integer and \(\mu_T\) is given by equation \eqref{eq:4.6.8}. $$ \begin{equation} \mu_T = \frac{-2eL}{\pi^2} \left( \frac{1}{n_T^2}-\frac{1}{\Delta n^2} \right) = \frac{8eL}{\pi^2}\left( \frac{n_fn_i}{\left( n_f^2-n_i^2\right)^2} \right) \label{eq:4.6.8} \end{equation} $$

    Example 4.18

    What is the value of the transition moment integral (equation \eqref{eq:4.6.7}) for the transitions \(1\rightarrow 3\) and \(2\rightarrow 4\)?

    Example 4.19

    What is the value of the transition moment integral, equation \eqref{eq:4.6.7}, for transitions \(1\rightarrow 2\) and \(2\rightarrow 3\)?

    The Particle-in-a-Box Selection Rule

    Example 4.20

    The lowest energy transition is from the HOMO to the LUMO, which were defined previously. Compute the value of the transition moment integral for the HOMO to LUMO transition \(E_3\rightarrow E_4\) for a cyanine dye with 3 carbon atoms in the conjugated chain. What is the next lowest energy transition for a particle-in-a-box? Compute the value of the transition moment integral for the next lowest energy transition that is allowed for this dye. What are the quantum numbers for the energy levels associated with this transition? How does the probability of this transition compare in magnitude with that for \( 3\rightarrow 4\)?

    Using Symmetry to Identify Integrals that are Zero

    Particle-in-a-Box Coordinate System

    Wavefunctions for quantum state n=1 and n=2 in two different coordinate systems showing that they are identical.

    Why did we shift the coordinates?

    The First Symmetry Analysis of \(\mu_T\)

    Wavefunctions for quantum state n=1 and n=2 and x, along with their products.

    Another Symmetry Analysis of \(\mu_T\)

    Wavefunctions for quantum state n=1 and n=3 and x, along with their products.

    New Spectroscopy Terms

    Example 4.21

    Use symmetry arguments to determine which of the following transitions between quantum states are allowed for the particle-in-a-box: \(n = 2\) to \(3\) or \(n = 2\) to \(4\).

    Other Properties of the Particle-in-a-Box

    The Heisenberg Uncertainty Principle

    Example 4.22

    Use the general form of the particle-in-a-box wavefunction \(\sin(kx)\) for any \(n\) to find the mathematical expression for the position expectation value \(\expect{x}\) for a box of length \(L\). How does \(\expect{x}\) depend on \(n\)? Evaluate the integral.

    Example 4.23

    Show that the particle-in-a-box wavefunctions are not eignfunctions of the momentum operator.

    Example 4.24

    Even though the wavefunctions are not momentum eigenfunctions, we can calculate the expectation value for the momentum. Show that the expectation or average value for the momentum of an electron in the box is zero in every state.

    The Momentum

    Looking at the Uncertainties

    Example 4.25

    Evaluate the product \(\sigma_x \cdot \sigma_p\) for \(n = 1\) and for general \(n\). Is the product greater than \(\frac{\hbar}{2}\) for all values of \(n\) and \(L\) as required by the Heisenberg Uncertainty Principle?

    Orthogonality

    Example 4.26

    Evaluate the integral \(\int \psi_1^* \psi_3 dx\) and as many other pairs of particle-in-a-box eigenfunctions as you wish (use symmetry arguments whenever possible) and explain what the results say about orthogonality of the functions.

    Example 4.27

    What happens to the energy level spacing for a particle-in-a-box when \( mL^2\) becomes much larger than \(h^2\)? What does this result imply about the relevance of quantization of energy to baseballs in a box between the pitching mound and home plate? What implications does quantum mechanics have for the game of baseball in a world where \(h\) is so large that baseballs exhibit quantum effects?

    Determining the Relative Energies of Wavefunctions by Examination

    Properties of Quantum Mechanical Systems

    Hermitian Theorem

    Hermitian Proof - 1

    Hermitian Proof - 2

    Othogonality Theorem

    Orthogonality Theorem Proof - 1

    Orthogonality Theorem Proof - 2

    Schmidt Orthogonalization Theorem

    Schmidt Orthogonalization Theorem Proof

    Commuting Operator Theorem

    Commuting Operator Theorem Proof - 1

    General Heisenberg Uncertainty Principle

    Example 4.28

    Show that the commutator for position and momentum in one dimension equals \( i \hbar\) and that the right-hand-side of Equation \eqref{eq:4.9.21} therefore equals \( \frac{\hbar}{2} \) giving \( \sigma_x \sigma_{p_x} \ge \frac{\hbar}{2}\)

    Overview of Key Concepts for the Particle in a Box

    Quantity Value
    Potential Energy $$ V = \left\{ \begin{split} & 0 \text{ for }0\lt x \lt L \\ & \infty \text{ otherwise} \end{split} \right. $$
    Hamiltonian \( \hat{\mathcal{H}}=-\frac{\hbar^2}{2m}\frac{d^2}{dx^2} \)
    Wavefuntions \( \left( \frac{2}{L} \right)^\frac{1}{2} \sin \left( \frac{n\pi}{L} x \right) \)
    Quantum Numbers \( n=1,2,3,\dots \)
    Energies \( E=n^2 \left( \frac{h^2}{8mL^2} \right) \)
    Spectroscopic Selection Rules \( \Delta n = \text{odd integer} \)
    Angular Momentum Properties none

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